Helper function to get available terms
Usage
get_annotation_terms(data = NULL, format = c("table", "vector"))Arguments
- data
tidyproteomics data object
- format
a character string specifying the return format: "table" (default) or "vector"
Examples
library(tidyproteomics)
get_annotation_terms(hela_proteins)
#> # A tibble: 10 × 3
#> term type unique_annotations
#> <chr> <chr> <int>
#> 1 protein identifier 7055
#> 2 description annotation 7021
#> 3 biological_process annotation 714
#> 4 cellular_component annotation 471
#> 5 molecular_function annotation 74
#> 6 gene_id_entrez annotation 6252
#> 7 gene_name annotation 6735
#> 8 wiki_pathway annotation 1689
#> 9 reactome_pathway annotation 2272
#> 10 gene_id_ensemble annotation 6715
get_annotation_terms(hela_proteins, format = "vector")
#> [1] "protein" "description" "biological_process"
#> [4] "cellular_component" "molecular_function" "gene_id_entrez"
#> [7] "gene_name" "wiki_pathway" "reactome_pathway"
#> [10] "gene_id_ensemble"