Helper function to get all annotations for a given term

Usage

get_annotations(data = NULL, term = NULL, format = c("table", "vector"))

Arguments

data: tidyproteomics data object
term: a character string
format: a character string specifying the return format: "table" (default) or "vector"

Value

a tibble or character vector

Examples

library(tidyproteomics)
get_annotations(hela_proteins, "biological_process")
#> # A tibble: 20,468 × 2
#>    protein annotation          
#>    <chr>   <chr>               
#>  1 Q15149  cell differentiation
#>  2 Q15149  cell growth         
#>  3 Q15149  cellular homeostasis
#>  4 Q15149  coagulation         
#>  5 Q15149  defense response    
#>  6 Q15149  metabolic process   
#>  7 Q09666  metabolic process   
#>  8 H0YDN1  cell growth         
#>  9 Q14204  cell differentiation
#> 10 Q14204  cell growth         
#> # ℹ 20,458 more rows
get_annotations(hela_proteins, "biological_process", format = "vector")
#>  [1] "cell differentiation"             "cell growth"                     
#>  [3] "cellular homeostasis"             "coagulation"                     
#>  [5] "defense response"                 "metabolic process"               
#>  [7] "conjugation"                      "cell organization and biogenesis"
#>  [9] "cell proliferation"               "cellular component movement"     
#> [11] "development"                      "cell communication"              
#> [13] "cell death"