Plot the accounting of proteins. peptides, and other counts — plot_counts • tidyproteomics

plot_counts() is a GGplot2 implementation for plotting counting statistics.

Usage

plot_counts(
  data = NULL,
  accounting = NULL,
  show_replicates = TRUE,
  impute_max = 0.5,
  palette = "YlGnBu",
  ...
)

Arguments

data: tidyproteomics data object
accounting: character string
show_replicates: boolean to visualize replicates
impute_max: a numeric representing the largest allowable imputation percentage
palette: a string representing the palette for scale_fill_brewer()
...: passthrough for ggsave see plotting

Value

a (tidyproteomics data-object | ggplot-object)

Examples

library(dplyr, warn.conflicts = FALSE)
library(tidyproteomics)
hela_proteins %>% plot_counts()


hela_proteins %>% plot_counts(show_replicates = FALSE, palette = 'Blues')